Liu XH, Liu PC, Li HJ, Xu Z, Jia L, Xia Y, Yu ML, Tang WQ, Zhu XL, Chen C, Zhang Y, Nango EK, Tanaka R, Luo FJ, Kato K, Nakajima Y, Kishi S, Yu HX, Matsubara N, Owada S, Tono K, Iwata S, Yu LJ*, Shen JR*, Wang JY* (2022). Excited-state intermediates in a designer protein encoding a phototrigger caught by an X-ray free-electron laser. Nat Chem. 14: 1054-1060.
Zhang Y, Qi CH, Yamano N, Wang P, Yu LJ*, Wang-Otomo ZY, Zhang JP* (2022). Carotenoid Single-Molecular Singlet Fission and the Photoprotection of a Bacteriochlorophyll b-Type Core Light-Harvesting Antenna. J Phys Chem Lett. 13 (16):3534-3541.
Tani K, Kanno R, Kurosawa K, Takaichi S, Nagashima KVP, Hall M, Yu LJ, Kimura Y, Madigan MT, Mizoguchi A, Humbel BM, Wang-Otomo Z-Y (2022). An LH1–RC photocomplex from an extremophilic phototroph provides insight into origins of two photosynthesis proteins. Commun Biol. 5 (1): 1197.
Tani K, Kobayashi K, Hosogi N, Ji X C, Nagashima S, Nagashima KVP, Izumida A, Inoue K, Tsukatani Y, Kanno R, Hall M, Yu LJ, Ishikawa I, Okura Y, Madigan MT, Mizoguchi A, Humbel BM, Kimura Y, Wang-Otomo ZY (2022). A Ca2+-binding motif underlies the unusual properties of certain photosynthetic bacterial core light-harvesting complexes. J Biol Chem. 298 (6), 101967.
Kimura Y, Nojima S, Nakata K, Yamashita T, Wang XP, Takenaka S, Akimoto S, Kobayashi M, Madigan MT, Wang-Otomo ZY#, and Yu LJ.# (2021). Electrostatic charge controls the lowest LH1 Q(y) transition energy in the triply extremophilic purple phototrophic bacterium, Halorhodospira halochloris. Biochim. Biophys. Acta Bioenerg. 1862: 148473. (#co-respondent)
Yang ZH* Qi CH*, Liu WZ, Yin DB, Yu LJ#, Li LD#, Guo XF.# (2021) Revealing conformational transition dynamics of photosynthetic proteins in single-molecule electrical circuits. J. Phys. Chem. Lett. 12: 3853-3859. (*equal contribution, #co-respondent)
Wang J*, Yu LJ*, Wang WD, Yan, QJ, Kuang TY, Qin XC, Shen J R. (2021) Structure of plant photosystem I-light harvesting complex I supercomplex at 2.4 A resolution. J. Integr. Plant Biol. 63: 1367-1381. (*equal contribution)
Kimura Y, Yamashita T, Seto R, Imanishi M, Honda M, Nakagawa S, Saga Y, Takenaka S, Yu LJ, Madigan MT, Wang-Otomo ZY. (2021) Circular dichroism and resonance Raman spectroscopies of bacteriochlorophyll b-containing LH1-RC complexes. Photosynth. Res. 148: 77-86.
Kawakami T*, Yu LJ*#, Liang T, Okazaki K, Madigan MT, Kimura Y, Wang-Otomo Z Y#. (2021). Crystal structure of a photosynthetic LH1-RC in complex with its electron donor HiPIP. Nat. Commun. 12: 1104. (*equal contribution, # co-respondent).
Tani K, Kanno R, Makino Y, Hall M, Takenouchi M, Imanishi M, Yu LJ, Overmann J, Madigan MT, Kimura Y, Mizoguchi A, Humbel BM, Wang-Otomo ZY. (2020) Cryo-EM structure of a Ca(2+)-bound photosynthetic LH1-RC complex containing multiple alphabeta-polypeptides. Nat. Commun. 11: 4955.
Zou MJ, Mu Y, Chai X, Ouyang M, Yu LJ, Zhang LX, Meurer J, Chi W. (2020) The critical function of the plastid rRNA methyltransferase, CMAL, in ribosome biogenesis and plant development. Nucleic Acids Res. 48: 3195-3210.
Wang W*, Yu LJ*, Xu C, Tomizaki T, Zhao S, Umena Y, Chen X, Qin X, Xin Y, Suga M, Han G, Kuang T, Shen JR. (2019) Structural basis for blue-green light harvesting and energy dissipation in diatoms. Science. 363: eaav0365. (*equal contribution)
Chen JH*, Yu LJ*, Boussac A, Wang-Otomo ZY, Kuang T, Shen JR. (2018) Properties and structure of a low-potential, penta-heme cytochrome c552 from a thermophilic purple sulfur photosynthetic bacterium Thermochromatium tepidum. Photosynth. Res. 139: 281-293. (*equal contribution)
Kimura, Y.; Kawakami, T.; Arikawa, T.; Li, Y., Yu, L. J.; Ohno, T.; Madigan, M. T.; Wang-Otomo, Z. Y.(2018). C-terminal cleavage of the LH1 alpha-polypeptide in the Sr2+-cultured Thermochromatium tepidum. Photosynth. Res. 135: 23-31.
Yu, J.; Fu, L. M.; Yu, L. J.; Shi, Y.; Wang, P.; Wang-Otomo, Z. Y.; Zhang, J. P.(2017). Carotenoid singlet fission reactions in bacterial light harvesting complexes as revealed by triplet excitation profiles. J. Am. Chem. Soc. 139: 15984-15993.
Suga M, Akita F, Sugahara M, Kubo M, Nakajima Y, Nakane T, Yamashita K, Umena Y, Nakabayashi M, Yamane T, Nakano T, Suzuki M, Masuda T, Inoue S, Kimura T, Nomura T, Yonekura S, Yu LJ, Sakamoto T, Motomura T, Chen JH, Kato Y, Noguchi T, Tono K, Joti Y, Kameshima T, Hatsui T, Nango E, Tanaka R, Naitow H, Matsuura Y, Yamashita A, Yamamoto M, Nureki O, Yabashi M, Ishikawa T, Iwata S, Shen JR. (2017). Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL. Nature. 543: 131-135.
Nagashima KVP, Sasaki M, Hashimoto K, Takaichi S, Nagashima S, Yu LJ, Abe Y, Gotou K, Kawakami T, Takenouchi M, Shibuya Y, Yamaguchi A, Ohno T, Shen JR, Inoue K, Madigan MT, Kimura Y, Wang-Otomo ZY. (2017). Probing structure–function relationships in early events in photosynthesis using a chimeric photocomplex. Proc. Natl. Acad. Sci. 114: 10906-10911.
Kimura Y, Yura Y, Hayashi Y, Li Y, Onoda M, Yu LJ, Wang-Otomo ZY, Ohno T. (2016) Spectroscopic and thermodynamic characterization of the metal-binding sites in the lh1-rc complex from thermophilic photosynthetic bacterium Thermochromatium tepidum. J. Phys. Chem. B. 120: 12466-12473.
Huo YL, Shi Y, Wang QY, Li L, Yu LJ, Wang P, Zhang JP, Wang, ZY (2016) Spectroscopic properties of LH2 from Thermochromatium tepidum in liposome and detergent micelles. Chem. J. Chin. Univ. 37: 1678-1685.
Shi Y, Zhao NJ, Wang P, Fu LM, Yu LJ, Zhang JP, Wang-Otomo ZY. (2015) Thermal adaptability of the light-harvesting complex 2 from Thermochromatium tepidum: Temperature-dependent excitation transfer dynamics. J. Phys. Chem. B. 119: 14871-14879.
Kimura Y, Inada Y, Yu L J, Ohno T, Wang Z. (2013) Strontium ions are functionally replaceable with calcium ions in the light-harvesting 1 reaction center core complex from thermophilic purple sulfur bacterium Thermochromatium tepidum. In Photosynthesis Research for Food, Fuel and the Future. (eds. Kuang, T. Y. et al.). 105-109 (Springer).
Sekine F, Horiguchi K, Kashino Y, Shimizu Y, Yu LJ, Kobayashi M, Wang ZY. (2012) Gene sequencing and characterization of the light-harvesting complex 2 from thermophilic purple sulfur bacterium Thermochromatium tepidum. Photosynth. Res. 111: 9-18.
Ma F, Kimura Y, Yu LJ, Wang P, Ai XC, Wang ZY, Zhang JP. (2009) Specific Ca2+-binding motif in the LH1 complex from photosynthetic bacterium Thermochromatium tepidum as revealed by optical spectroscopy and structural modeling. FEBS J. 276: 1739-1749.
